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Melainabacteria

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Melainabacteria
SEM of Chlorella sorokiniana and attached Vampirovibrio chlorellavorus cells.

Scale bar, 5.0 μm.

Scientific classification Edit this classification
Domain: Bacteria
Phylum: Cyanobacteria
Class: Melainabacteria
Di Rienzi et al. 2013[1]
Orders
  • "Caenarcaniphilales"
  • "Gastranaerophilales"
  • "Obscuribacterales"
  • "Vampirovibrionales"
Synonyms
  • "Melainobacteriota" corrig. Di Rienzi et al. 2013
  • Vampirovibrionia Chuvochina et al. 2024
  • "Vampirovibrionophyceae" corrig. Strunecký & Mareš 2022

Melainabacteria is a class of bacteria within the phylum Cyanobacteriota.[2] Vampirovibrio chlorellavorus is the only species of class Melainabacteria that has been grown in cell culture.[2] Candidatus species of Melainabacteria have been discovered through DNA and RNA sequence analysis of samples from soil, the human gut and various aquatic habitats such as groundwater. Melainabacteria was originally designated a phylum when its DNA was discovered in 2013, then in 2014 was demoted to a class.[2] By analyzing genomes of Melainabacteria, predictions are possible about their cell structure and metabolic abilities. The deduced structure of the bacterial cell is similar to cyanobacteria in being surrounded by two membranes.[3] It differs from cyanobacteria in its predicted ability to move by flagella (like gram-negative flagella), though some members (e.g. Gastranaerophilales) appear to lack flagella.[3] It is predicted that Melainabacteria are not able to perform photosynthesis, but obtain energy by fermentation. Class Melainabacteria is also known as class Vampirovibrionophyceae.[4]

Phylogeny

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16S rRNA based LTP_10_2024[5][6][7] 120 marker proteins based GTDB 09-RS220[8][9][10]
"Cyanobacteriota"

Cyanobacteria

"Melainabacteria"

Vampirovibrio

"Cyanobacteriota"

"Sericytochromatia"

Cyanobacteria

"Melainabacteria"
"Caenarcanales"
"Caenarcanaceae"

"Ca. Caenarcanum"

"Obscuribacterales"
"Obscuribacteraceae"

"Ca. Obscuribacter"

Vampirovibrionales
Vampirovibrionaceae

Vampirovibrio

"Gastranaerophilales"
"Adamsellaceae"

"Ca. Adamsella"

RUG14156

"Ca. Galligastranaerophilus"

"Gastranaerophilaceae"

Classification

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Ecological niche

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Melainabacteria nucleic acids can be found in a range of environments, including soil, water, and animal habitats. They can be often be found in the gut of humans and in the respiratory tract, oral environments, and skin surface, though rarely. Melainabacteria nucleic acids are often found in natural environments such as groundwater aquifers and lake sediment, soil, bioreactor,[2] and the aphotic zone of aquatic environments such as lake sediment and aquifers.[2] Cyanobacteria bloom in freshwater systems as a result of excess nutrients and high temperatures, resulting in a scum on the water surface that resembles spilled paint.[2] Because Melainabacteria is a type of Cyanobacteria, it has raised concern because Melainabacteria thrive in groundwater systems. The genomes of Melainabacteria were found to be bigger when found in aquifer systems and algal cultivation ponds than when in the mammalian gut environment.[2]

Origin

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The Great Oxygenation Event (GOE) increased the abundance of oxygen in the atmosphere. [11][12] Bacteria that existed before the GEO did not rely on oxygen, such as the billion-year-old Cyanobacteriota. Although they belong to the phylum Cyanobacteria, Melainabacteria do not photosynthesize.[13] Cyanobacteria produced atmospheric oxygen and supported the development of early plant cells.[14]

Genome

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The genomes of Melainabacteria organisms isolated from ground water indicate that the organism has the capacity to fix nitrogen. Melainabacteria are predicted to lack linked electron transport chains but have multiple methods to generate a membrane potential which can then produce ATP via ATP synthase. They are thought to be able to use Fe hydrogenases for H
2 production that can be consumed by other microorganisms. Melainabacteria from the human gut also are thought to synthesize several B and K vitamins, which suggests that these bacteria are beneficial to their host because they are consumed along with plant fibers.[3][15]

Animal habitats

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Melainabacteria may play a role in digesting fiber in the human gut,[3] and are more commonly in herbivorous mammals and those with plant-rich diets.[3] Because plant diets require more fiber break-down, Melainabacteria may aid in this digestive function. However, scientists do not know why these microbes are in the gut and how they got there.[3] Ongoing studies such as, "The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria," are funded by various organizations such as the National Institutes of Health, the David and Lucile Packard Foundation, The Hartwell Foundation, the Arnold and Mabel Beckman Foundation, the U.S. Department of Energy, the European Molecular Biology Organization and the Wellcome Trust. [14]

See also

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References

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  1. ^ Di Rienzi, S.C., Sharon, I., Wrighton, K.C., Koren, O., Hug, L.A., Thomas, B.C., Goodrich, J.K., Bell, J.T., Spector, T.D., Banfield, J.F., and Ley, R.E. "The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria." eLife (2013) 2:e01102.
  2. ^ a b c d e f g Hu, Chenlin; Rzymski, Piotr (2022-02-05). "Non-Photosynthetic Melainabacteria (Cyanobacteria) in Human Gut: Characteristics and Association with Health". Life. 12 (4): 476. Bibcode:2022Life...12..476H. doi:10.3390/life12040476. ISSN 2075-1729. PMC 9029806. PMID 35454968.
  3. ^ a b c d e f Di Rienzi, SC; Sharon, I; Wrighton, KC; Koren, O; Hug, LA; Thomas, BC; Goodrich, JK; Bell, JT; Spector, TD; Banfield, JF; Ley, RE (2013). "The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria". eLife. 2: e01102. doi:10.7554/eLife.01102. PMC 3787301. PMID 24137540.
  4. ^ https://lpsn.dsmz.de/class/vampirovibrionophyceae
  5. ^ "The LTP". Retrieved 10 December 2024.
  6. ^ "LTP_all tree in newick format". Retrieved 10 December 2024.
  7. ^ "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
  8. ^ "GTDB release 09-RS220". Genome Taxonomy Database. Retrieved 10 May 2024.
  9. ^ "bac120_r220.sp_labels". Genome Taxonomy Database. Retrieved 10 May 2024.
  10. ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2024.
  11. ^ Olejarz, Jason; Iwasa, Yoh; Knoll, Andrew H.; Nowak, Martin A. (2021-06-28). "The Great Oxygenation Event as a consequence of ecological dynamics modulated by planetary change". Nature Communications. 12 (1): 3985. Bibcode:2021NatCo..12.3985O. doi:10.1038/s41467-021-23286-7. ISSN 2041-1723. PMC 8238953. PMID 34183660. S2CID 235673343.
  12. ^ Grettenberger, Christen; Sumner, Dawn Y.; Eisen, Jonathan A.; Jungblut, Anne D.; Mackey, Tyler J. (2021-06-18). "Phylogeny and Evolutionary History of Respiratory Complex I Proteins in Melainabacteria". Genes. 12 (6): 929. doi:10.3390/genes12060929. ISSN 2073-4425. PMC 8235220. PMID 34207155.
  13. ^ Biello, David. "The Origin of Oxygen in Earth's Atmosphere". Scientific American. Retrieved 2022-10-03.
  14. ^ a b "New bacteria found in human gut". Cornell Chronicle. Retrieved 2022-10-03.
  15. ^ Soo, RM; Skennerton, CT; Sekiguchi, Y; Imelfort, M; Paech, SJ; Dennis, PG; Steen, JA; Parks, DH; Tyson, GW; Hugenholtz, P (2014). "An expanded genomic representation of the phylum cyanobacteria". Genome Biol Evol. 6 (5): 1031–45. doi:10.1093/gbe/evu073. PMC 4040986. PMID 24709563.
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